The scene in which Jesus baptises Mary Magdalene in the lake and her dress becomes slightly translucent while they are standing close and almost hugging might be considered to have sexual overtones.
Jesus and Mary do not have a sexual or romantic relationship. The closest they come is when Jesus tenderly strokes Mary's hair and face with his hand. But it goes no farther.
A woman tells Jesus a horrific story of how a woman, when she was caught with a man not her husband, was raped and killed.
In the movie's postscript, we're told that Pope Gregory declared that Mary was a prostitute--a misnomer that still lingers in popular imagination, even though the Vatican itself backed away from that declaration some decades ago.